PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005189m
Common NameCICLE_v10005189mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 376aa    MW: 42331.8 Da    PI: 6.6096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005189mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011298320123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  Ciclev10005189m 298 FMCRKCGKAFAVRGDWRTHEKNC 320
                      89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58214236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64214241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-6214233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.85E-6280318No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5294318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808298318IPR007087Zinc finger, C2H2
SMARTSM0035549298318IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MADPYSNFFS GLLKFNNSPN QNYQHYPASQ QRHFAQTNTF AFNQNQSHHP YYFQYQSSPP  60
SPPLREALPL LSLSPRRHEE EAEEEEEEEE EHHQHSCNIA EAAAAMDVDK NKGKLVEESN  120
LFFSSTSSTA TAALHHEDDD ETTAVTVALH IGLPSPSASE MASLLSSSSE ISGHDHNGDH  180
GGDDSSAGYP FNRLNKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY  240
RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC  300
RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE  360
DEPASEVEQD NESMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421457.10.0hypothetical protein CICLE_v10005189mg
SwissprotQ9SVY11e-147ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV4S3300.0V4S330_9R
STRINGVIT_08s0007g08070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein